Browse Articles

Applying centrality analysis on a protein interaction network to predict colorectal cancer driver genes

Saha et al. | Nov 18, 2023

Applying centrality analysis on a protein interaction network to predict colorectal cancer driver genes

In this article the authors created an interaction map of proteins involved in colorectal cancer to look for driver vs. non-driver genes. That is they wanted to see if they could determine what genes are more likely to drive the development and progression in colorectal cancer and which are present in altered states but not necessarily driving disease progression.

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Evaluating need for adversarial training data given algorithmic defense methods against adversarial attacks

Yian et al. | Jul 05, 2026

Evaluating need for adversarial training data given algorithmic defense methods against adversarial attacks

The purpose of this study was to determine the necessity of previous non-algorithmic attacks (Adversarial Training) in light of algorithmic defense methods (Gradient Masking and Defensive Distillation) against FGSM attacks. We found a significant increase in image classification accuracy from defense methods with the non-algorithmic defense method compared to ones without. By analyzing the significance with a McNemar test, we determined that the inclusion of non-algorithmic defense methods is still necessary in light of new algorithmic defense methods.

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A five-year retrospective analysis of Tuberculosis risk factors and their variability in the United States

Kini et al. | Mar 14, 2026

A five-year retrospective analysis of Tuberculosis risk factors and their variability in the United States
Image credit: Kini, Diaz Gaviria, Diaz, and Kini

The main goal of this study is to determine what demographics are related to tuberculosis incidence in the United States populations, particularly if changing demographics are related to differences in tuberculosis risk over two discrete time periods. The major finding is that in the two studied time periods, tuberculosis risk factors were somewhat consistent and may be influenced by things such as immigration, healthcare access, and race or ethnicity, although the top predictor did change.

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Survival analysis in cardiovascular epidemiology: nexus between heart disease and mortality

Lachwani et al. | Oct 23, 2024

Survival analysis in cardiovascular epidemiology: nexus between heart disease and mortality

In 2021, over 20 million people died from cardiovascular diseases, highlighting the need for a deeper understanding of factors influencing heart failure outcomes. This study examined multiple variables affecting mortality after heart failure, using random forest models to identify time, serum creatinine, and ejection fraction as key predictors. These findings could contribute to personalized medicine, improving survival rates by tailoring treatment strategies for heart failure patients.

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Development of a novel machine learning platform to identify structural trends among NNRTI HIV-1 reverse transcriptase inhibitors

Ashok et al. | Jun 24, 2022

Development of a novel machine learning platform to identify structural trends among NNRTI HIV-1 reverse transcriptase inhibitors

With advancements in machine learning a large data scale, high throughput virtual screening has become a more attractive method for screening drug candidates. This study compared the accuracy of molecular descriptors from two cheminformatics Mordred and PaDEL, software libraries, in characterizing the chemo-structural composition of 53 compounds from the non-nucleoside reverse transcriptase inhibitors (NNRTI) class. The classification model built with the filtered set of descriptors from Mordred was superior to the model using PaDEL descriptors. This approach can accelerate the identification of hit compounds and improve the efficiency of the drug discovery pipeline.

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Machine learning on crowd-sourced data to highlight coral disease

Narayan et al. | Jul 26, 2021

Machine learning on crowd-sourced data to highlight coral disease

Triggered largely by the warming and pollution of oceans, corals are experiencing bleaching and a variety of diseases caused by the spread of bacteria, fungi, and viruses. Identification of bleached/diseased corals enables implementation of measures to halt or retard disease. Benthic cover analysis, a standard metric used in large databases to assess live coral cover, as a standalone measure of reef health is insufficient for identification of coral bleaching/disease. Proposed herein is a solution that couples machine learning with crowd-sourced data – images from government archives, citizen science projects, and personal images collected by tourists – to build a model capable of identifying healthy, bleached, and/or diseased coral.

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Deep learning for pulsar detection: Investigating hyperparameter effects on TensorFlow classification accuracy

Upadhyay et al. | Jan 31, 2026

Deep learning for pulsar detection: Investigating hyperparameter effects on TensorFlow classification accuracy

This study investigates how the hyperparameters epochs and batch size affect the classification accuracy of a convolutional neural network (CNN) trained on pulsar candidate data. Our results reveal that accuracy improves with increasing number of epochs and smaller batch sizes, suggesting that with optimized hyperparameters, high accuracy may be achievable with minimal training. These findings offer insights that could help create more efficient machine learning classification models for pulsar signal detection, with the potential of accelerating pulsar discovery and advancing astrophysical research.

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